BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction by Diana Sousa and Francisco M. Couto was accepted at ECIR 2020 (Core A).
Paper: Using research literature to generate datasets of implicit feedback for recommending scientific items
by: Márcia Barros; André Moitinho; Francisco M. Couto
IEEE Access (Early Access)
https://ieeexplore.ieee.org/document/8924687
9th DeST Project Meeting
When: December 19, 3:00pm – 4:30pm
Where: 6.3.26
What: André Neves, André Nascimento, Fábio Colaço, Mariana Lourenço will describe their recent developments.
Workshop at FCT/UNL
The Cell and Mollecular Biology Nucleus of FCT/UNL organized a BioInformatics Workshop lead by Francisco Couto.
https://www.facebook.com/nucleobcm/photos/a.842954439055167/3076501585700430/
8th DeST Project Meeting
Python packaging tutorial by André Lamúrias
When: November 28, 3:00pm – 4:00pm Where: 6.3.26
Description:
This tutorial is for researchers who use python to develop tools and methods, and wish to make them more accessible to the community. The tutorial will not focus on coding style and patterns, but on the documentation and packaging process.
Objective: Learn to develop a python package from scratch using these tools:
– Track changes with git
– Create documentation with sphinx
– Create package with setuptools
– Upload to pypi with twine
Prerequisites: basic python knowledge, laptop with internet access, GitHub account
Duration: 60 minutes
Workshop at University of Coimbra
Francisco Couto is organizing the workshop about data and text processing using command line at the 5th Ecology Meeting (meet.Eco Coimbra) on November 23.
On this workshop the participants will have the opportunity to learn a set of capabilities to retrieve data from any web resource, extract pointers and retrieve additional information from other resources, such as related text.
The 5th meet.Eco will take place on November 23 and 24, at the Faculty of Sciences and Technology of the University of Coimbra. Check the event page for more information.
Paper: PPR-SSM: personalized PageRank and semantic similarity measures for entity linking
by Andre Lamurias, Pedro Ruas & Francisco M. Couto
BMC Bioinformatics
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3157-y
7th DeST Project Meeting
Informal presentations of the most recent submitted works by Andre Lamurias, Marcia Barros, Diana Sousa, and Pedro Ruas and a coffee break in the end.
When: October 31, 2:00pm – 4:00pm Where: 6.3.26
Seminar: Recommender Systems for Scientific Items
Bioinformatics and computational biology seminar
By Márcia Barros
Date: October 10th 2019 12:30h
Where: C2 2.4.16 FCUL